1 HAMP#1
89-159 aa · 71 aa · 18.7% of protein
Raw token
HAMP:89:0.000000000367:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS09280
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS09280Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 380 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.6% of protein
Raw token
HisKA:164:0.000000000234:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.7% of protein
Raw token
HATPase_c:272:5.75e-32:380:109:109- Raw architecture: HAMP:89:0.000000000367:159:71:69#HisKA:164:0.000000000234:230:67:64#HATPase_c:272:5.75e-32:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000006.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100591-102368Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_01890RefSeq proteinWP_055223726.1
Context group ID
GCF_001406175::NZ_CYYJ01000006.1::G00025Context members
ARA20_RS09275ARA20_RS09280
Partner locus tags
ARA20_RS09275ARA20_RS09280
Partner old locus tags
ERS852400_01889ERS852400_01890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223726.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K2C2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K2C2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS09280Primary locus identifier stored in the genes table.
Old locus tagERS852400_01890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval101 226-102 368 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 591-102 368 ntGCF_001406175::NZ_CYYJ01000006.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000006.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span100 591-102 368 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 591 nt102 368 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS09275GCF_001406175#ARA20_RS09275
RROmpR
100 591-101 229 nt · Forward (+)
ARA20_RS09280GCF_001406175#ARA20_RS09280
HKClassicCurrent focus
101 226-102 368 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS09280The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2611036
Simplified PFAM architecture for HKOC_2611036
PFAM domain coverage: 225 / 380 aa (59.2%)
1 aa380 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-380]
- Domain count: 3
- Matched identifier: HKOC_2611036
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-380
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS09280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key