1 HisKA#1
122-180 aa · 59 aa · 17.4% of protein
Raw token
HisKA:122:0.00000247:180:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS08690
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS08690Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 339 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-333 aa · 108 aa · 31.9% of protein
Raw token
HATPase_c:226:2.16e-16:333:108:109- Raw architecture: HisKA:122:0.00000247:180:61:64#HATPase_c:226:2.16e-16:333:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208445-210157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_01770RefSeq proteinWP_055223621.1
Context group ID
GCF_001406175::NZ_CYYJ01000005.1::G00024Context members
ARA20_RS08685ARA20_RS08690
Partner locus tags
ARA20_RS08685ARA20_RS08690
Partner old locus tags
ERS852400_01769ERS852400_01770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223621.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IBG2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IBG2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS08690Primary locus identifier stored in the genes table.
Old locus tagERS852400_01770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval209 138-210 157 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 445-210 157 ntGCF_001406175::NZ_CYYJ01000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span208 445-210 157 nt1 713 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 445 nt210 157 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS08685GCF_001406175#ARA20_RS08685
RROmpR
208 445-209 113 nt · Forward (+)
ARA20_RS08690GCF_001406175#ARA20_RS08690
HKClassicCurrent focus
209 138-210 157 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405115#ARB31_RS04605Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2839938
Simplified PFAM architecture for HKOC_2839938
PFAM domain coverage: 109 / 339 aa (32.2%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[226-334]
- Domain count: 1
- Matched identifier: HKOC_2839938
- Positioned domains: HATPase_c 226-334
Cluster members and taxonomy
Representative gene: GCF_001405115#ARB31_RS04605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key