1 HisKA#1
800-854 aa · 55 aa · 3.8% of protein
Raw token
HisKA:800:0.0000417:854:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS07725
Histidine kinase, Unorthodox
Coprococcus eutactus · GCF_001406175
ClassHKTypeUnorthodoxLength1436 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS07725Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length1436 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage344 / 1436 aa (24.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1436 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
968-1063 aa · 96 aa · 6.7% of protein
Raw token
HATPase_c:968:0.00000000000101:1063:101:1093 Response_reg#3
1098-1212 aa · 115 aa · 8.0% of protein
Raw token
Response_reg:1098:3.04e-25:1212:115:1114 Hpt#4
1266-1343 aa · 78 aa · 5.4% of protein
Raw token
Hpt:1266:0.0000000478:1343:79:84- Raw architecture: HisKA:800:0.0000417:854:56:64#HATPase_c:968:0.00000000000101:1063:101:109#Response_reg:1098:3.04e-25:1212:115:111#Hpt:1266:0.0000000478:1343:79:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000004.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span227752-232062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_01574RefSeq proteinWP_055146799.1
Context group ID
GCF_001406175::NZ_CYYJ01000004.1::G00020Context members
ARA20_RS07725
Partner locus tags
ARA20_RS07725
Partner old locus tags
ERS852400_01574
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055146799.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NXX5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NXX5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS07725Primary locus identifier stored in the genes table.
Old locus tagERS852400_01574Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval227 752-232 062 nt4 311 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span227 752-232 062 ntGCF_001406175::NZ_CYYJ01000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span227 752-232 062 nt4 311 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 752 nt232 062 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS07725GCF_001406175#ARA20_RS07725
HKUnorthodoxCurrent focus
227 752-232 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404315#ARB66_RS10045Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Y_Y_Y + HATPase_c + Response_reg + Hpt5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0057985
Simplified PFAM architecture for HKOC_0057985
PFAM domain coverage: 339 / 1436 aa (23.6%)
1 aa1436 aa
Reg_propY_Y_YHATPase_cResponse_regHpt
- Simplified architecture: Reg_prop + Y_Y_Y + HATPase_c + Response_reg + Hpt
- Raw architecture: Reg_prop[379-400] | Y_Y_Y[677-730] | HATPase_c[988-1064] | Response_reg[1098-1210] | Hpt[1267-1339]
- Domain count: 5
- Matched identifier: HKOC_0057985
- Positioned domains: Reg_prop 379-400 ; Y_Y_Y 677-730 ; HATPase_c 988-1064 ; Response_reg 1098-1210 ; Hpt 1267-1339
Cluster members and taxonomy
Representative gene: GCF_001404315#ARB66_RS10045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key