1 dCache_1#1
146-293 aa · 148 aa · 23.8% of protein
Raw token
dCache_1:146:0.000000000449:293:153:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS01525
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength622 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS01525Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length622 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage336 / 622 aa (54.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa622 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-472 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:393:4.04e-33:472:80:803 HATPase_c#3
488-595 aa · 108 aa · 17.4% of protein
Raw token
HATPase_c:488:1.72e-16:595:111:109- Raw architecture: dCache_1:146:0.000000000449:293:153:195#His_kinase:393:4.04e-33:472:80:80#HATPase_c:488:1.72e-16:595:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338562-342106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_00313RefSeq proteinWP_330377921.1
Context group ID
GCF_001406175::NZ_CYYJ01000001.1::G00004Context members
ARA20_RS01520ARA20_RS01525
Partner locus tags
ARA20_RS01520ARA20_RS01525
Partner old locus tags
ERS852400_00312ERS852400_00313
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_330377921.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K632Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K632_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS01525Primary locus identifier stored in the genes table.
Old locus tagERS852400_00313Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval340 202-342 106 nt1 905 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span338 562-342 106 ntGCF_001406175::NZ_CYYJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span338 562-342 106 nt3 545 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 562 nt342 106 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS01520GCF_001406175#ARA20_RS01520
RRunclassified
338 562-340 169 nt · Forward (+)
ARA20_RS01525GCF_001406175#ARA20_RS01525
HKClassicCurrent focus
340 202-342 106 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS01525The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0967193
Simplified PFAM architecture for HKOC_0967193
PFAM domain coverage: 422 / 622 aa (67.8%)
1 aa622 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[59-292] | His_kinase[394-472] | HATPase_c[488-596]
- Domain count: 3
- Matched identifier: HKOC_0967193
- Positioned domains: dCache_1 59-292 ; His_kinase 394-472 ; HATPase_c 488-596
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS01525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key