1 HisKA#1
87-148 aa · 62 aa · 20.2% of protein
Raw token
HisKA:87:0.000000000052:148:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA37_RS02720
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405415
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405415#ARA37_RS02720Stable P2CS identifier used across views.
GenomeGCF_001405415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 307 aa (53.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-301 aa · 103 aa · 33.6% of protein
Raw token
HATPase_c:199:1.45e-30:301:103:109- Raw architecture: HisKA:87:0.000000000052:148:62:64#HATPase_c:199:1.45e-30:301:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405415::NZ_CZBR01000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98948-100541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852390_00563RefSeq proteinWP_055156570.1
Context group ID
GCF_001405415::NZ_CZBR01000002.1::G00003Context members
ARA37_RS02720ARA37_RS02725
Partner locus tags
ARA37_RS02720ARA37_RS02725
Partner old locus tags
ERS852390_00563ERS852390_00564
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055156570.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA37_RS02720Primary locus identifier stored in the genes table.
Old locus tagERS852390_00563Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBR01000002.1Sequence record reported by the local genomic context database.
Genomic interval98 948-99 871 nt924 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 948-100 541 ntGCF_001405415::NZ_CZBR01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405415::NZ_CZBR01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span98 948-100 541 nt1 594 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 948 nt100 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA37_RS02720GCF_001405415#ARA37_RS02720
HKClassicCurrent focus
98 948-99 871 nt · Reverse (-)
ARA37_RS02725GCF_001405415#ARA37_RS02725
RROmpR
99 864-100 541 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS02720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2880629
Simplified PFAM architecture for HKOC_2880629
PFAM domain coverage: 166 / 307 aa (54.1%)
1 aa307 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-300]
- Domain count: 2
- Matched identifier: HKOC_2880629
- Positioned domains: HisKA 86-148 ; HATPase_c 198-300
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405415
Assembly13414_6#17 · Scaffoldhaploid
Genome composition3 326 529 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key