1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.91e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS11960
Response regulator OmpR family
Dorea longicatena · GCF_001405135
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS11960Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:156:5.07e-33:230:77:77- Raw architecture: Response_reg:6:1.91e-36:115:111:111#Trans_reg_C:156:5.07e-33:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000013.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58363-60492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_02437RefSeq proteinWP_006427019.1
Context group ID
GCF_001405135::NZ_CYYY01000013.1::G00024Context members
ARC33_RS11955ARC33_RS11960
Partner locus tags
ARC33_RS11955ARC33_RS11960
Partner old locus tags
ERS852423_02436ERS852423_02437
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427019.1Primary protein accession used for annex mappings.
UniProt accessionA6BGF8Primary UniProt accession resolved in the annex database.
UniProt IDA6BGF8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS11960Primary locus identifier stored in the genes table.
Old locus tagERS852423_02437Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000013.1Sequence record reported by the local genomic context database.
Genomic interval59 791-60 492 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 363-60 492 ntGCF_001405135::NZ_CYYY01000013.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000013.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000013.1All displayed genes belong to this local TCS context.
Neighborhood span58 363-60 492 nt2 130 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 363 nt60 492 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS11955GCF_001405135#ARC33_RS11955
HKClassic
58 363-59 775 nt · Reverse (-)
ARC33_RS11960GCF_001405135#ARC33_RS11960
RROmpRCurrent focus
59 791-60 492 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS04505Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080753
Simplified PFAM architecture for RROC_1080753
PFAM domain coverage: 184 / 233 aa (79.0%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1080753
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS04505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key