1 HisKA_3#1
173-234 aa · 62 aa · 16.0% of protein
Raw token
HisKA_3:173:0.00000000000000364:234:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS01450
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength388 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS01450Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length388 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 388 aa (43.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa388 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-382 aa · 106 aa · 27.3% of protein
Raw token
HATPase_c:277:0.00000000199:382:110:109- Raw architecture: HisKA_3:173:0.00000000000000364:234:64:68#HATPase_c:277:0.00000000199:382:110:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span259917-261736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_00299RefSeq proteinWP_055180207.1
Context group ID
GCF_001405135::NZ_CYYY01000001.1::G00003Context members
ARC33_RS01450ARC33_RS01455
Partner locus tags
ARC33_RS01450ARC33_RS01455
Partner old locus tags
ERS852423_00299ERS852423_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055180207.1Primary protein accession used for annex mappings.
UniProt accessionA0A173WIQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A173WIQ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS01450Primary locus identifier stored in the genes table.
Old locus tagERS852423_00299Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000001.1Sequence record reported by the local genomic context database.
Genomic interval259 917-261 083 nt1 167 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span259 917-261 736 ntGCF_001405135::NZ_CYYY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span259 917-261 736 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
259 917 nt261 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS01450GCF_001405135#ARC33_RS01450
HKClassicCurrent focus
259 917-261 083 nt · Forward (+)
ARC33_RS01455GCF_001405135#ARC33_RS01455
RRNarL
261 080-261 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS01450The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2543584
Simplified PFAM architecture for HKOC_2543584
PFAM domain coverage: 171 / 388 aa (44.1%)
1 aa388 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[173-235] | HATPase_c[277-384]
- Domain count: 2
- Matched identifier: HKOC_2543584
- Positioned domains: HisKA_3 173-235 ; HATPase_c 277-384
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS01450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key