1 HAMP#1
190-257 aa · 68 aa · 14.0% of protein
Raw token
HAMP:190:0.000000297:257:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARC33_RS00165
Histidine kinase, Classic
Dorea longicatena · GCF_001405135
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405135#ARC33_RS00165Stable P2CS identifier used across views.
GenomeGCF_001405135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 487 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-326 aa · 66 aa · 13.6% of protein
Raw token
HisKA:261:0.000000000000251:326:66:643 HATPase_c#3
374-483 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:374:1.87e-31:483:110:109- Raw architecture: HAMP:190:0.000000297:257:68:69#HisKA:261:0.000000000000251:326:66:64#HATPase_c:374:1.87e-31:483:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405135::NZ_CYYY01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28899-31008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852423_00032RefSeq proteinWP_055179907.1
Context group ID
GCF_001405135::NZ_CYYY01000001.1::G00001Context members
ARC33_RS00160ARC33_RS00165
Partner locus tags
ARC33_RS00160ARC33_RS00165
Partner old locus tags
ERS852423_00031ERS852423_00032
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055179907.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8RZL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8RZL5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARC33_RS00165Primary locus identifier stored in the genes table.
Old locus tagERS852423_00032Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYY01000001.1Sequence record reported by the local genomic context database.
Genomic interval29 545-31 008 nt1 464 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 899-31 008 ntGCF_001405135::NZ_CYYY01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405135::NZ_CYYY01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span28 899-31 008 nt2 110 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 899 nt31 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARC33_RS00160GCF_001405135#ARC33_RS00160
RROmpR
28 899-29 588 nt · Forward (+)
ARC33_RS00165GCF_001405135#ARC33_RS00165
HKClassicCurrent focus
29 545-31 008 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS09650Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1560211
Simplified PFAM architecture for HKOC_1560211
PFAM domain coverage: 176 / 487 aa (36.1%)
1 aa487 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[261-326] | HATPase_c[374-483]
- Domain count: 2
- Matched identifier: HKOC_1560211
- Positioned domains: HisKA 261-326 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS09650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405135
Assembly13414_6#50 · Scaffoldhaploid
Genome composition3 126 606 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 60 · HK 30 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key