1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.91e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORLON_RS04505
Response regulator OmpR family
Dorea longicatena DSM 13814 · GCF_000154065
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154065#DORLON_RS04505Stable P2CS identifier used across views.
GenomeGCF_000154065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:156:5.07e-33:230:77:77- Raw architecture: Response_reg:6:1.91e-36:115:111:111#Trans_reg_C:156:5.07e-33:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154065::NZ_DS264392.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span531290-533419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORLON_01380RefSeq proteinWP_006427019.1
Context group ID
GCF_000154065::NZ_DS264392.1::G00030Context members
DORLON_RS04505DORLON_RS04510
Partner locus tags
DORLON_RS04505DORLON_RS04510
Partner old locus tags
DORLON_01380DORLON_01381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427019.1Primary protein accession used for annex mappings.
UniProt accessionA6BGF8Primary UniProt accession resolved in the annex database.
UniProt IDA6BGF8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORLON_RS04505Primary locus identifier stored in the genes table.
Old locus tagDORLON_01380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264392.1Sequence record reported by the local genomic context database.
Genomic interval531 290-531 991 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span531 290-533 419 ntGCF_000154065::NZ_DS264392.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154065::NZ_DS264392.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264392.1All displayed genes belong to this local TCS context.
Neighborhood span531 290-533 419 nt2 130 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
531 290 nt533 419 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORLON_RS04505GCF_000154065#DORLON_RS04505
RROmpRCurrent focus
531 290-531 991 nt · Forward (+)
DORLON_RS04510GCF_000154065#DORLON_RS04510
HKClassic
532 007-533 419 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS04505The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080753
Simplified PFAM architecture for RROC_1080753
PFAM domain coverage: 184 / 233 aa (79.0%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1080753
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS04505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 462 · GCF_000154065
AssemblyASM15406v1 · Scaffoldhaploid
Genome composition2 915 433 bp · 41,5% GCDorea longicatena DSM 13814
Signal transduction countsGenes 64 · HK 31 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key