1 Response_reg#1
7-114 aa · 108 aa · 48.0% of protein
Raw token
Response_reg:7:5.72e-35:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS15490
Response regulator OmpR family
Blautia obeum · GCF_001404535
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS15490Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:146:3.54e-31:221:76:77- Raw architecture: Response_reg:7:5.72e-35:114:109:111#Trans_reg_C:146:3.54e-31:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000033.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4712-6299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_03144RefSeq proteinWP_020994095.1
Context group ID
GCF_001404535::NZ_CYZD01000033.1::G00046Context members
ARA50_RS15485ARA50_RS15490
Partner locus tags
ARA50_RS15485ARA50_RS15490
Partner old locus tags
ERS852394_03143ERS852394_03144
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020994095.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IFJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IFJ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS15490Primary locus identifier stored in the genes table.
Old locus tagERS852394_03144Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000033.1Sequence record reported by the local genomic context database.
Genomic interval5 622-6 299 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 712-6 299 ntGCF_001404535::NZ_CYZD01000033.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000033.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000033.1All displayed genes belong to this local TCS context.
Neighborhood span4 712-6 299 nt1 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 712 nt6 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS15485GCF_001404535#ARA50_RS15485
HKClassic
4 712-5 524 nt · Reverse (-)
ARA50_RS15490GCF_001404535#ARA50_RS15490
RROmpRCurrent focus
5 622-6 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS15490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1470799
Simplified PFAM architecture for RROC_1470799
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[146-222]
- Domain count: 2
- Matched identifier: RROC_1470799
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 146-222 ; Trans_reg_C 146-222
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS15490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key