1 GAF_3#1
214-337 aa · 124 aa · 21.2% of protein
Raw token
GAF_3:214:0.0000208:337:129:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS10285
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS10285Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 584 aa (52.2%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation3 items
2 HisKA#2
357-424 aa · 68 aa · 11.6% of protein
Raw token
HisKA:357:0.0000000000346:424:68:643 HATPase_c#3
467-579 aa · 113 aa · 19.3% of protein
Raw token
HATPase_c:467:3.64e-29:579:113:109- Raw architecture: GAF_3:214:0.0000208:337:129:129#HisKA:357:0.0000000000346:424:68:64#HATPase_c:467:3.64e-29:579:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000010.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span647-2918Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_02082RefSeq proteinWP_055066278.1
Context group ID
GCF_001404535::NZ_CYZD01000010.1::G00025Context members
ARA50_RS10280ARA50_RS10285
Partner locus tags
ARA50_RS10280ARA50_RS10285
Partner old locus tags
ERS852394_02081ERS852394_02082
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055066278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS10285Primary locus identifier stored in the genes table.
Old locus tagERS852394_02082Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000010.1Sequence record reported by the local genomic context database.
Genomic interval1 341-2 918 nt1 578 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span647-2 918 ntGCF_001404535::NZ_CYZD01000010.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000010.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000010.1All displayed genes belong to this local TCS context.
Neighborhood span647-2 918 nt2 272 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
647 nt2 918 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS10280GCF_001404535#ARA50_RS10280
RROmpR
647-1 348 nt · Reverse (-)
ARA50_RS10285GCF_001404535#ARA50_RS10285
HKClassicCurrent focus
1 341-2 918 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS10285The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1142548
Simplified PFAM architecture for HKOC_1142548
PFAM domain coverage: 287 / 584 aa (49.1%)
1 aa584 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[87-194] | HisKA[357-424] | HATPase_c[468-578]
- Domain count: 3
- Matched identifier: HKOC_1142548
- Positioned domains: DUF4118 87-194 ; HisKA 357-424 ; HATPase_c 468-578
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS10285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key