1 Response_reg#1
51-131 aa · 81 aa · 57.4% of protein
Raw token
Response_reg:51:0.0000000336:131:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS09695
Response regulator, CheY family
Blautia obeum · GCF_001404535
ClassRRTypeCheYLength141 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS09695Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length141 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage81 / 141 aa (57.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa141 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:51:0.0000000336:131:86:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000008.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116391-116816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01961RefSeq proteinWP_330380121.1
Context group ID
GCF_001404535::NZ_CYZD01000008.1::G00023Context members
ARA50_RS09695
Partner locus tags
ARA50_RS09695
Partner old locus tags
ERS852394_01961
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330380121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS09695Primary locus identifier stored in the genes table.
Old locus tagERS852394_01961Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000008.1Sequence record reported by the local genomic context database.
Genomic interval116 391-116 816 nt426 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 391-116 816 ntGCF_001404535::NZ_CYZD01000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span116 391-116 816 nt426 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 391 nt116 816 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS09695GCF_001404535#ARA50_RS09695
RRCheYCurrent focus
116 391-116 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS09695The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2262795
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS09695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key