1 HAMP#1
184-256 aa · 73 aa · 15.3% of protein
Raw token
HAMP:184:0.00000000632:256:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS09400
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS09400Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 478 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 His_kinase#2
273-352 aa · 80 aa · 16.7% of protein
Raw token
His_kinase:273:1.56e-30:352:80:803 HATPase_c#3
372-470 aa · 99 aa · 20.7% of protein
Raw token
HATPase_c:372:0.00000000000000966:470:104:109- Raw architecture: HAMP:184:0.00000000632:256:73:69#His_kinase:273:1.56e-30:352:80:80#HATPase_c:372:0.00000000000000966:470:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000008.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58834-61916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01902RefSeq proteinWP_055066145.1
Context group ID
GCF_001404535::NZ_CYZD01000008.1::G00020Context members
ARA50_RS09400ARA50_RS09405
Partner locus tags
ARA50_RS09400ARA50_RS09405
Partner old locus tags
ERS852394_01902ERS852394_01903
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066145.1Primary protein accession used for annex mappings.
UniProt accessionA0A174E318Primary UniProt accession resolved in the annex database.
UniProt IDA0A174E318_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS09400Primary locus identifier stored in the genes table.
Old locus tagERS852394_01902Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000008.1Sequence record reported by the local genomic context database.
Genomic interval58 834-60 270 nt1 437 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 834-61 916 ntGCF_001404535::NZ_CYZD01000008.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000008.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span58 834-61 916 nt3 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 834 nt61 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS09400GCF_001404535#ARA50_RS09400
HKClassicCurrent focus
58 834-60 270 nt · Reverse (-)
ARA50_RS09405GCF_001404535#ARA50_RS09405
RRunclassified
60 267-61 916 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS09400The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1637854
Simplified PFAM architecture for HKOC_1637854
PFAM domain coverage: 174 / 478 aa (36.4%)
1 aa478 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[274-350] | HATPase_c[374-470]
- Domain count: 2
- Matched identifier: HKOC_1637854
- Positioned domains: His_kinase 274-350 ; HATPase_c 374-470
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS09400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key