1 HisKA#1
17-69 aa · 53 aa · 23.6% of protein
Raw token
HisKA:17:0.000000175:69:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS08835
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS08835Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 225 aa (69.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-224 aa · 104 aa · 46.2% of protein
Raw token
HATPase_c:121:4.98e-32:224:108:109- Raw architecture: HisKA:17:0.000000175:69:53:64#HATPase_c:121:4.98e-32:224:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000007.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span125762-126439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01785RefSeq proteinWP_055066118.1
Context group ID
GCF_001404535::NZ_CYZD01000007.1::G00018Context members
ARA50_RS08835
Partner locus tags
ARA50_RS08835
Partner old locus tags
ERS852394_01785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066118.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DHN1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DHN1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS08835Primary locus identifier stored in the genes table.
Old locus tagERS852394_01785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000007.1Sequence record reported by the local genomic context database.
Genomic interval125 762-126 439 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 762-126 439 ntGCF_001404535::NZ_CYZD01000007.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000007.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000007.1All displayed genes belong to this local TCS context.
Neighborhood span125 762-126 439 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 762 nt126 439 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS08835GCF_001404535#ARA50_RS08835
HKClassicCurrent focus
125 762-126 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS08835The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2927188
Simplified PFAM architecture for HKOC_2927188
PFAM domain coverage: 159 / 225 aa (70.7%)
1 aa225 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[17-71] | HATPase_c[121-224]
- Domain count: 2
- Matched identifier: HKOC_2927188
- Positioned domains: HisKA 17-71 ; HATPase_c 121-224
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS08835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key