1 SBP_bac_3#1
57-274 aa · 218 aa · 23.1% of protein
Raw token
SBP_bac_3:57:9.54e-28:274:235:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS05820
Histidine kinase, Hybrid
Blautia obeum · GCF_001404535
ClassHKTypeHybridLength943 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS05820Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length943 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage719 / 943 aa (76.2%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa943 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
296-493 aa · 198 aa · 21.0% of protein
Raw token
SBP_bac_3:296:2.32e-18:493:213:2243 HisKA#3
567-632 aa · 66 aa · 7.0% of protein
Raw token
HisKA:567:6.21e-18:632:66:644 HATPase_c#4
679-797 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:679:1.69e-28:797:119:1095 Response_reg#5
820-937 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:820:6.9e-32:937:118:111- Raw architecture: SBP_bac_3:57:9.54e-28:274:235:224#SBP_bac_3:296:2.32e-18:493:213:224#HisKA:567:6.21e-18:632:66:64#HATPase_c:679:1.69e-28:797:119:109#Response_reg:820:6.9e-32:937:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000004.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span174907-177738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01179RefSeq proteinWP_055065899.1
Context group ID
GCF_001404535::NZ_CYZD01000004.1::G00012Context members
ARA50_RS05820
Partner locus tags
ARA50_RS05820
Partner old locus tags
ERS852394_01179
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065899.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AYA5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AYA5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS05820Primary locus identifier stored in the genes table.
Old locus tagERS852394_01179Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000004.1Sequence record reported by the local genomic context database.
Genomic interval174 907-177 738 nt2 832 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 907-177 738 ntGCF_001404535::NZ_CYZD01000004.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000004.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span174 907-177 738 nt2 832 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 907 nt177 738 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS05820GCF_001404535#ARA50_RS05820
HKHybridCurrent focus
174 907-177 738 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS05820The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0337041
Simplified PFAM architecture for HKOC_0337041
PFAM domain coverage: 501 / 943 aa (53.1%)
1 aa943 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[61-261] | HisKA[567-632] | HATPase_c[680-795] | Response_reg[820-937]
- Domain count: 4
- Matched identifier: HKOC_0337041
- Positioned domains: SBP_bac_3 61-261 ; HisKA 567-632 ; HATPase_c 680-795 ; Response_reg 820-937
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key