1 sCache_like#1
34-130 aa · 97 aa · 17.4% of protein
Raw token
sCache_like:34:0.00000000058:130:104:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS05255
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength556 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS05255Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 556 aa (48.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-397 aa · 66 aa · 11.9% of protein
Raw token
HisKA:332:4.8e-17:397:66:643 HATPase_c#3
446-553 aa · 108 aa · 19.4% of protein
Raw token
HATPase_c:446:3.74e-30:553:108:109- Raw architecture: sCache_like:34:0.00000000058:130:104:114#HisKA:332:4.8e-17:397:66:64#HATPase_c:446:3.74e-30:553:108:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000004.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span36977-38647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01062RefSeq proteinWP_055065855.1
Context group ID
GCF_001404535::NZ_CYZD01000004.1::G00008Context members
ARA50_RS05255
Partner locus tags
ARA50_RS05255
Partner old locus tags
ERS852394_01062
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065855.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AIZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AIZ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS05255Primary locus identifier stored in the genes table.
Old locus tagERS852394_01062Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000004.1Sequence record reported by the local genomic context database.
Genomic interval36 977-38 647 nt1 671 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 977-38 647 ntGCF_001404535::NZ_CYZD01000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span36 977-38 647 nt1 671 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 977 nt38 647 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS05255GCF_001404535#ARA50_RS05255
HKClassicCurrent focus
36 977-38 647 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS05255The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1272629
Simplified PFAM architecture for HKOC_1272629
PFAM domain coverage: 269 / 556 aa (48.4%)
1 aa556 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[34-129] | HisKA[332-397] | HATPase_c[446-552]
- Domain count: 3
- Matched identifier: HKOC_1272629
- Positioned domains: sCache_like 34-129 ; HisKA 332-397 ; HATPase_c 446-552
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS05255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key