1 His_kinase#1
122-201 aa · 80 aa · 23.1% of protein
Raw token
His_kinase:122:5.92e-32:201:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS04925
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS04925Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 347 aa (55.0%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
225-335 aa · 111 aa · 32.0% of protein
Raw token
HATPase_c:225:0.00000000000389:335:112:109- Raw architecture: His_kinase:122:5.92e-32:201:80:80#HATPase_c:225:0.00000000000389:335:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span254181-256875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01001RefSeq proteinWP_055065826.1
Context group ID
GCF_001404535::NZ_CYZD01000003.1::G00006Context members
ARA50_RS04925ARA50_RS04930
Partner locus tags
ARA50_RS04925ARA50_RS04930
Partner old locus tags
ERS852394_01001ERS852394_01002
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065826.1Primary protein accession used for annex mappings.
UniProt accessionA0A174A6V1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174A6V1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS04925Primary locus identifier stored in the genes table.
Old locus tagERS852394_01001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000003.1Sequence record reported by the local genomic context database.
Genomic interval254 181-255 224 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span254 181-256 875 ntGCF_001404535::NZ_CYZD01000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span254 181-256 875 nt2 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 181 nt256 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS04925GCF_001404535#ARA50_RS04925
HKClassicCurrent focus
254 181-255 224 nt · Reverse (-)
ARA50_RS04930GCF_001404535#ARA50_RS04930
RRunclassified
255 286-256 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS04925The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810766
Simplified PFAM architecture for HKOC_2810766
PFAM domain coverage: 191 / 347 aa (55.0%)
1 aa347 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[122-201] | HATPase_c[225-335]
- Domain count: 2
- Matched identifier: HKOC_2810766
- Positioned domains: His_kinase 122-201 ; HATPase_c 225-335
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS04925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key