1 dCache_1#1
47-285 aa · 239 aa · 40.2% of protein
Raw token
dCache_1:47:2.23e-22:285:244:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS04105
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS04105Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage494 / 595 aa (83.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.8% of protein
Raw token
HAMP:305:2.61e-16:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:389:9.7e-35:468:80:804 HATPase_c#4
484-588 aa · 105 aa · 17.6% of protein
Raw token
HATPase_c:484:0.00000000000000332:588:109:109- Raw architecture: dCache_1:47:2.23e-22:285:244:195#HAMP:305:2.61e-16:374:70:69#His_kinase:389:9.7e-35:468:80:80#HATPase_c:484:0.00000000000000332:588:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83067-86470Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_00836RefSeq proteinWP_022387932.1
Context group ID
GCF_001404535::NZ_CYZD01000003.1::G00005Context members
ARA50_RS04105ARA50_RS04110
Partner locus tags
ARA50_RS04105ARA50_RS04110
Partner old locus tags
ERS852394_00836ERS852394_00837
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022387932.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZJQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZJQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS04105Primary locus identifier stored in the genes table.
Old locus tagERS852394_00836Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000003.1Sequence record reported by the local genomic context database.
Genomic interval83 067-84 854 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 067-86 470 ntGCF_001404535::NZ_CYZD01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span83 067-86 470 nt3 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 067 nt86 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS04105GCF_001404535#ARA50_RS04105
HKClassicCurrent focus
83 067-84 854 nt · Reverse (-)
ARA50_RS04110GCF_001404535#ARA50_RS04110
RRunclassified
84 851-86 470 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS04105The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1080446
Simplified PFAM architecture for HKOC_1080446
PFAM domain coverage: 475 / 595 aa (79.8%)
1 aa595 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[51-285] | HAMP[321-374] | His_kinase[389-468] | HATPase_c[484-589]
- Domain count: 4
- Matched identifier: HKOC_1080446
- Positioned domains: dCache_1 51-285 ; HAMP 321-374 ; His_kinase 389-468 ; HATPase_c 484-589
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS04105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key