1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:3.65e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS01300
Response regulator, unclassified
Blautia obeum · GCF_001404535
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS01300Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 392 aa (48.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.00000000114:338:42:423 HTH_AraC#3
351-386 aa · 36 aa · 9.2% of protein
Raw token
HTH_AraC:351:0.0000000966:386:36:42- Raw architecture: Response_reg:4:3.65e-31:115:112:111#HTH_AraC:297:0.00000000114:338:42:42#HTH_AraC:351:0.0000000966:386:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span257538-260525Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_00268RefSeq proteinWP_055065489.1
Context group ID
GCF_001404535::NZ_CYZD01000001.1::G00001Context members
ARA50_RS01295ARA50_RS01300
Partner locus tags
ARA50_RS01295ARA50_RS01300
Partner old locus tags
ERS852394_00267ERS852394_00268
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065489.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X0J5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X0J5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS01300Primary locus identifier stored in the genes table.
Old locus tagERS852394_00268Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000001.1Sequence record reported by the local genomic context database.
Genomic interval259 347-260 525 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span257 538-260 525 ntGCF_001404535::NZ_CYZD01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span257 538-260 525 nt2 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
257 538 nt260 525 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS01295GCF_001404535#ARA50_RS01295
HKClassic
257 538-259 322 nt · Forward (+)
ARA50_RS01300GCF_001404535#ARA50_RS01300
RRunclassifiedCurrent focus
259 347-260 525 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS01300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402355
Simplified PFAM architecture for RROC_0402355
PFAM domain coverage: 187 / 392 aa (47.7%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[300-338] | HTH_AraC[351-386]
- Domain count: 3
- Matched identifier: RROC_0402355
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_AraC 300-338 ; HTH_AraC 300-338 ; HTH_AraC 351-386 ; HTH_AraC 351-386
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS01300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key