1 Response_reg#1
4-114 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:4:4.55e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS01150
Response regulator OmpR family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741715#BISA_RS01150Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:1.08e-26:219:76:77- Raw architecture: Response_reg:4:4.55e-31:114:111:111#Trans_reg_C:146:1.08e-26:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741715::NZ_JGZN01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263642-265395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_0195RefSeq proteinWP_033889679.1
Context group ID
GCF_000741715::NZ_JGZN01000003.1::G00004Context members
BISA_RS01150BISA_RS01155
Partner locus tags
BISA_RS01150BISA_RS01155
Partner old locus tags
BISA_0195BISA_0196
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033889679.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SC26Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SC26_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS01150Primary locus identifier stored in the genes table.
Old locus tagBISA_0195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000003.1Sequence record reported by the local genomic context database.
Genomic interval263 642-264 313 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 642-265 395 ntGCF_000741715::NZ_JGZN01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span263 642-265 395 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 642 nt265 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BISA_RS01150GCF_000741715#BISA_RS01150
RROmpRCurrent focus
263 642-264 313 nt · Forward (+)
BISA_RS01155GCF_000741715#BISA_RS01155
HKClassic
264 310-265 395 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS01150The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591410
Simplified PFAM architecture for RROC_1591410
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1591410
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS01150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key