1 Response_reg#1
19-128 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:19:7.79e-25:128:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS00915
Response regulator OmpR family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741715#BISA_RS00915Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 234 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-229 aa · 70 aa · 29.9% of protein
Raw token
Trans_reg_C:160:4.87e-16:229:77:77- Raw architecture: Response_reg:19:7.79e-25:128:111:111#Trans_reg_C:160:4.87e-16:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741715::NZ_JGZN01000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214592-216333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_0148RefSeq proteinWP_051917247.1
Context group ID
GCF_000741715::NZ_JGZN01000003.1::G00002Context members
BISA_RS00915BISA_RS00920
Partner locus tags
BISA_RS00915BISA_RS00920
Partner old locus tags
BISA_0148BISA_0149
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051917247.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SAS4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SAS4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS00915Primary locus identifier stored in the genes table.
Old locus tagBISA_0148Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000003.1Sequence record reported by the local genomic context database.
Genomic interval214 592-215 296 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span214 592-216 333 ntGCF_000741715::NZ_JGZN01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span214 592-216 333 nt1 742 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 592 nt216 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BISA_RS00915GCF_000741715#BISA_RS00915
RROmpRCurrent focus
214 592-215 296 nt · Forward (+)
BISA_RS00920GCF_000741715#BISA_RS00920
HKClassic
215 323-216 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS00915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049978
Simplified PFAM architecture for RROC_1049978
PFAM domain coverage: 179 / 234 aa (76.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[19-127] | Trans_reg_C[160-229]
- Domain count: 2
- Matched identifier: RROC_1049978
- Positioned domains: Response_reg 19-127 ; Response_reg 19-127 ; Trans_reg_C 160-229 ; Trans_reg_C 160-229
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS00915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key