1 HisKA#1
118-179 aa · 62 aa · 18.5% of protein
Raw token
HisKA:118:0.000000000173:179:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS00920
Histidine kinase, Classic
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741715#BISA_RS00920Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 336 aa (51.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
226-335 aa · 110 aa · 32.7% of protein
Raw token
HATPase_c:226:1.76e-19:335:111:109- Raw architecture: HisKA:118:0.000000000173:179:62:64#HATPase_c:226:1.76e-19:335:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741715::NZ_JGZN01000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214592-216333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_0149RefSeq proteinWP_051917248.1
Context group ID
GCF_000741715::NZ_JGZN01000003.1::G00002Context members
BISA_RS00915BISA_RS00920
Partner locus tags
BISA_RS00915BISA_RS00920
Partner old locus tags
BISA_0148BISA_0149
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051917248.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SB86Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SB86_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS00920Primary locus identifier stored in the genes table.
Old locus tagBISA_0149Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000003.1Sequence record reported by the local genomic context database.
Genomic interval215 323-216 333 nt1 011 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span214 592-216 333 ntGCF_000741715::NZ_JGZN01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span214 592-216 333 nt1 742 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 592 nt216 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BISA_RS00915GCF_000741715#BISA_RS00915
RROmpR
214 592-215 296 nt · Forward (+)
BISA_RS00920GCF_000741715#BISA_RS00920
HKClassicCurrent focus
215 323-216 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS00920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2846500
Simplified PFAM architecture for HKOC_2846500
PFAM domain coverage: 171 / 336 aa (50.9%)
1 aa336 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[118-179] | HATPase_c[227-335]
- Domain count: 2
- Matched identifier: HKOC_2846500
- Positioned domains: HisKA 118-179 ; HATPase_c 227-335
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS00920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key