1 HAMP#1
185-254 aa · 70 aa · 11.4% of protein
Raw token
HAMP:185:0.00000000000000102:254:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N775_RS0105370
Histidine kinase, Classic
Pediococcus acidilactici AGR20 · GCF_000526815
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000526815#N775_RS0105370Stable P2CS identifier used across views.
GenomeGCF_000526815Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage346 / 615 aa (56.3%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation4 items
2 PAS_9#2
274-370 aa · 97 aa · 15.8% of protein
Raw token
PAS_9:274:0.000000000335:370:102:1023 HisKA#3
378-444 aa · 67 aa · 10.9% of protein
Raw token
HisKA:378:3.48e-17:444:67:644 HATPase_c#4
496-607 aa · 112 aa · 18.2% of protein
Raw token
HATPase_c:496:6.9e-34:607:112:109- Raw architecture: HAMP:185:0.00000000000000102:254:70:69#PAS_9:274:0.000000000335:370:102:102#HisKA:378:3.48e-17:444:67:64#HATPase_c:496:6.9e-34:607:112:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000526815::NZ_JAGU01000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1092576-1094423Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526815::NZ_JAGU01000001.1::G00006Context members
N775_RS0105370
Partner locus tags
N775_RS0105370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_024862811.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN775_RS0105370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGU01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 092 576-1 094 423 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 092 576-1 094 423 ntGCF_000526815::NZ_JAGU01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526815::NZ_JAGU01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 092 576-1 094 423 nt1 848 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 092 576 nt1 094 423 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
N775_RS0105370GCF_000526815#N775_RS0105370
HKClassicCurrent focus
1 092 576-1 094 423 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526815#N775_RS0105370The current gene is the representative for this cluster.
PFAM architectureCache_WalK + HAMP + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0988894
Simplified PFAM architecture for HKOC_0988894
PFAM domain coverage: 420 / 615 aa (68.3%)
1 aa615 aa
Cache_WalKHAMPPAS_9HisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS_9 + HisKA + HATPase_c
- Raw architecture: Cache_WalK[75-169] | HAMP[202-253] | PAS_9[275-370] | HisKA[378-443] | HATPase_c[496-606]
- Domain count: 5
- Matched identifier: HKOC_0988894
- Positioned domains: Cache_WalK 75-169 ; HAMP 202-253 ; PAS_9 275-370 ; HisKA 378-443 ; HATPase_c 496-606
Cluster members and taxonomy
Representative gene: GCF_000526815#N775_RS0105370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 067 · GCF_000526815
AssemblyASM52681v1 · Contighaploid
Genome composition1 924 318 bp · 42,5% GCPediococcus acidilactici AGR20
Signal transduction countsGenes 14 · HK 6 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyLactobacillaceaeGenusPediococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Lactobacillaceae7Pediococcus
Related genes
Preview from the same derived genome key