1 Response_reg#1
5-115 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:5:3.45e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N775_RS0103055
Response regulator OmpR family
Pediococcus acidilactici AGR20 · GCF_000526815
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000526815#N775_RS0103055Stable P2CS identifier used across views.
GenomeGCF_000526815Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:8.35e-40:228:77:77- Raw architecture: Response_reg:5:3.45e-40:115:111:111#Trans_reg_C:152:8.35e-40:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000526815::NZ_JAGU01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span600252-602316Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526815::NZ_JAGU01000001.1::G00003Context members
N775_RS0103050N775_RS0103055
Partner locus tags
N775_RS0103050N775_RS0103055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_024862566.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP3X8I1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP3X8I1_PEDACDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN775_RS0103055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGU01000001.1Sequence record reported by the local genomic context database.
Genomic interval601 612-602 316 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span600 252-602 316 ntGCF_000526815::NZ_JAGU01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526815::NZ_JAGU01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span600 252-602 316 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
600 252 nt602 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
N775_RS0103050GCF_000526815#N775_RS0103050
HKClassic
600 252-601 640 nt · Reverse (-)
N775_RS0103055GCF_000526815#N775_RS0103055
RROmpRCurrent focus
601 612-602 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526815#N775_RS0103055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049371
Simplified PFAM architecture for RROC_1049371
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1049371
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000526815#N775_RS0103055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 067 · GCF_000526815
AssemblyASM52681v1 · Contighaploid
Genome composition1 924 318 bp · 42,5% GCPediococcus acidilactici AGR20
Signal transduction countsGenes 14 · HK 6 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyLactobacillaceaeGenusPediococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Lactobacillaceae7Pediococcus
Related genes
Preview from the same derived genome key