1 Response_reg#1
34-108 aa · 75 aa · 26.6% of protein
Raw token
Response_reg:34:0.0000000974:108:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N775_RS0104930
Response regulator, unclassified
Pediococcus acidilactici AGR20 · GCF_000526815
ClassRRTypeunclassifiedLength282 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000526815#N775_RS0104930Stable P2CS identifier used across views.
GenomeGCF_000526815Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 282 aa (69.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation2 items
2 YcbB#2
153-272 aa · 120 aa · 42.6% of protein
Raw token
YcbB:153:2.61e-26:272:131:131- Raw architecture: Response_reg:34:0.0000000974:108:76:111#YcbB:153:2.61e-26:272:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000526815::NZ_JAGU01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1005498-1006346Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526815::NZ_JAGU01000001.1::G00004Context members
N775_RS0104930
Partner locus tags
N775_RS0104930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008841989.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5Y534Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5Y534_PEDACDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN775_RS0104930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGU01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 005 498-1 006 346 nt849 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 005 498-1 006 346 ntGCF_000526815::NZ_JAGU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526815::NZ_JAGU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 005 498-1 006 346 nt849 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 005 498 nt1 006 346 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
N775_RS0104930GCF_000526815#N775_RS0104930
RRunclassifiedCurrent focus
1 005 498-1 006 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526815#N775_RS0104930The current gene is the representative for this cluster.
PFAM architectureYcbB1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0594483
Simplified PFAM architecture for RROC_0594483
PFAM domain coverage: 119 / 282 aa (42.2%)
1 aa282 aa
YcbB
- Simplified architecture: YcbB
- Raw architecture: YcbB[154-272]
- Domain count: 1
- Matched identifier: RROC_0594483
- Positioned domains: YcbB 154-272 ; YcbB 154-272
Cluster members and taxonomy
Representative gene: GCF_000526815#N775_RS0104930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 067 · GCF_000526815
AssemblyASM52681v1 · Contighaploid
Genome composition1 924 318 bp · 42,5% GCPediococcus acidilactici AGR20
Signal transduction countsGenes 14 · HK 6 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyLactobacillaceaeGenusPediococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Lactobacillaceae7Pediococcus
Related genes
Preview from the same derived genome key