1 Response_reg#1
6-116 aa · 111 aa · 46.8% of protein
Raw token
Response_reg:6:9.94e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS23385
Response regulator OmpR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_000466465#HMPREF1548_RS23385Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-234 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:159:3.89e-30:234:77:77- Raw architecture: Response_reg:6:9.94e-36:116:111:111#Trans_reg_C:159:3.89e-30:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_000466465::NZ_KE992763.1::G00138
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span21404-26812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_05686RefSeq proteinWP_025489923.1
Context group ID
GCF_000466465::NZ_KE992763.1::G00138Context members
HMPREF1548_RS23385HMPREF1548_RS23390HMPREF1548_RS23395HMPREF1548_RS23400
Partner locus tags
HMPREF1548_RS23385HMPREF1548_RS23390HMPREF1548_RS23395HMPREF1548_RS23400
Partner old locus tags
HMPREF1548_05686HMPREF1548_05687HMPREF1548_05688HMPREF1548_05689
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489923.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WA85Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WA85_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS23385Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_05686Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992763.1Sequence record reported by the local genomic context database.
Genomic interval21 404-22 117 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 404-26 812 ntGCF_000466465::NZ_KE992763.1::G00138
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992763.1::G00138Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992763.1All displayed genes belong to this local TCS context.
Neighborhood span21 404-26 812 nt5 409 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 404 nt26 812 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
HMPREF1548_RS23385GCF_000466465#HMPREF1548_RS23385
RROmpRCurrent focus
21 404-22 117 nt · Forward (+)
HMPREF1548_RS23390GCF_000466465#HMPREF1548_RS23390
HKClassic
22 092-24 944 nt · Forward (+)
HMPREF1548_RS23395GCF_000466465#HMPREF1548_RS23395
RROmpR
25 020-25 697 nt · Forward (+)
HMPREF1548_RS23400GCF_000466465#HMPREF1548_RS23400
HKClassic
25 667-26 812 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS23385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962963
Simplified PFAM architecture for RROC_0962963
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[159-234]
- Domain count: 2
- Matched identifier: RROC_0962963
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 159-234 ; Trans_reg_C 159-234
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS23385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key