1 Response_reg#1
4-116 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:4:6.87e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS03160
Response regulator, unclassified
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS03160Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 509 aa (35.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
428-455 aa · 28 aa · 5.5% of protein
Raw token
HTH_AraC:428:0.0000189:455:28:423 HTH_AraC#3
468-505 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:468:0.000000000185:505:38:42- Raw architecture: Response_reg:4:6.87e-26:116:113:111#HTH_AraC:428:0.0000189:455:28:42#HTH_AraC:468:0.000000000185:505:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992659.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15242-18621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00292RefSeq proteinWP_021634287.1
Context group ID
GCF_000466465::NZ_KE992659.1::G00030Context members
HMPREF1548_RS03160HMPREF1548_RS03165
Partner locus tags
HMPREF1548_RS03160HMPREF1548_RS03165
Partner old locus tags
HMPREF1548_00292HMPREF1548_00293
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021634287.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS03160Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00292Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992659.1Sequence record reported by the local genomic context database.
Genomic interval15 242-16 771 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 242-18 621 ntGCF_000466465::NZ_KE992659.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992659.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992659.1All displayed genes belong to this local TCS context.
Neighborhood span15 242-18 621 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 242 nt18 621 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS03160GCF_000466465#HMPREF1548_RS03160
RRunclassifiedCurrent focus
15 242-16 771 nt · Forward (+)
HMPREF1548_RS03165GCF_000466465#HMPREF1548_RS03165
HKClassic
16 786-18 621 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS03160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147341
Simplified PFAM architecture for RROC_0147341
PFAM domain coverage: 190 / 509 aa (37.3%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[428-505]
- Domain count: 2
- Matched identifier: RROC_0147341
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 428-505 ; HTH_18 428-505
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS03160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key