1 HisKA#1
286-352 aa · 67 aa · 10.1% of protein
Raw token
HisKA:286:9.6e-16:352:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS03100
Histidine kinase, Hybrid
Clostridium sp. KLE 1755 · GCF_000466465
ClassHKTypeHybridLength664 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS03100Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length664 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 664 aa (45.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa664 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
399-516 aa · 118 aa · 17.8% of protein
Raw token
HATPase_c:399:4.28e-30:516:118:1093 Response_reg#3
540-657 aa · 118 aa · 17.8% of protein
Raw token
Response_reg:540:3.61e-29:657:118:111- Raw architecture: HisKA:286:9.6e-16:352:67:64#HATPase_c:399:4.28e-30:516:118:109#Response_reg:540:3.61e-29:657:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992657.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73340-75334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00278RefSeq proteinWP_051358300.1
Context group ID
GCF_000466465::NZ_KE992657.1::G00029Context members
HMPREF1548_RS03100
Partner locus tags
HMPREF1548_RS03100
Partner old locus tags
HMPREF1548_00278
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051358300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS03100Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00278Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992657.1Sequence record reported by the local genomic context database.
Genomic interval73 340-75 334 nt1 995 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 340-75 334 ntGCF_000466465::NZ_KE992657.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992657.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992657.1All displayed genes belong to this local TCS context.
Neighborhood span73 340-75 334 nt1 995 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 340 nt75 334 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS03100GCF_000466465#HMPREF1548_RS03100
HKHybridCurrent focus
73 340-75 334 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS03100The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860392
Simplified PFAM architecture for HKOC_0860392
PFAM domain coverage: 300 / 664 aa (45.2%)
1 aa664 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[286-352] | HATPase_c[399-515] | Response_reg[540-655]
- Domain count: 3
- Matched identifier: HKOC_0860392
- Positioned domains: HisKA 286-352 ; HATPase_c 399-515 ; Response_reg 540-655
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS03100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key