1 Response_reg#1
4-91 aa · 88 aa · 38.4% of protein
Raw token
Response_reg:4:0.00000000000000135:91:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS30245
Response regulator LytTR family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeLytTRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS30245Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 229 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-223 aa · 83 aa · 36.2% of protein
Raw token
LytTR:141:5.27e-21:223:88:98- Raw architecture: Response_reg:4:0.00000000000000135:91:88:111#LytTR:141:5.27e-21:223:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850951.1::G00098
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1702538-1703227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_03848RefSeq proteinWP_002603612.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00098Context members
HMPREF1093_RS30245
Partner locus tags
HMPREF1093_RS30245
Partner old locus tags
HMPREF1093_03848
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603612.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4UII1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4UII1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS30245Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_03848Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval1 702 538-1 703 227 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 702 538-1 703 227 ntGCF_000371445::NZ_KB850951.1::G00098
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00098Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span1 702 538-1 703 227 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 702 538 nt1 703 227 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS30245GCF_000371445#HMPREF1093_RS30245
RRLytTRCurrent focus
1 702 538-1 703 227 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS30245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248836
Simplified PFAM architecture for RROC_1248836
PFAM domain coverage: 200 / 229 aa (87.3%)
1 aa229 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[138-223]
- Domain count: 2
- Matched identifier: RROC_1248836
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 138-223 ; LytTR 138-223
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS30245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key