1 HAMP#1
298-367 aa · 70 aa · 11.8% of protein
Raw token
HAMP:298:0.00000000122:367:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS01120
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS01120Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 591 aa (43.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:382:8.67e-25:461:80:803 HATPase_c#3
478-586 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:478:0.00000000159:586:112:109- Raw architecture: HAMP:298:0.00000000122:367:70:69#His_kinase:382:8.67e-25:461:80:80#HATPase_c:478:0.00000000159:586:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266595-269923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00219RefSeq proteinWP_002600033.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00006Context members
HMPREF1093_RS01115HMPREF1093_RS01120
Partner locus tags
HMPREF1093_RS01115HMPREF1093_RS01120
Partner old locus tags
HMPREF1093_00218HMPREF1093_00219
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600033.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS01120Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00219Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval268 148-269 923 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span266 595-269 923 ntGCF_000371445::NZ_KB850950.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span266 595-269 923 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 595 nt269 923 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS01115GCF_000371445#HMPREF1093_RS01115
RRunclassified
266 595-268 151 nt · Reverse (-)
HMPREF1093_RS01120GCF_000371445#HMPREF1093_RS01120
HKClassicCurrent focus
268 148-269 923 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS01120The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1105292
Simplified PFAM architecture for HKOC_1105292
PFAM domain coverage: 237 / 591 aa (40.1%)
1 aa591 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[317-367] | His_kinase[382-459] | HATPase_c[478-585]
- Domain count: 3
- Matched identifier: HKOC_1105292
- Positioned domains: HAMP 317-367 ; His_kinase 382-459 ; HATPase_c 478-585
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS01120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key