1 HAMP#1
290-360 aa · 71 aa · 12.2% of protein
Raw token
HAMP:290:0.0000000000135:360:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS00265
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS00265Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage205 / 580 aa (35.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-454 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:376:1.16e-24:454:80:803 HATPase_c#3
472-526 aa · 55 aa · 9.5% of protein
Raw token
HATPase_c:472:0.00000199:526:55:109- Raw architecture: HAMP:290:0.0000000000135:360:71:69#His_kinase:376:1.16e-24:454:80:80#HATPase_c:472:0.00000199:526:55:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55547-58988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00052RefSeq proteinWP_002599866.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00002Context members
HMPREF1093_RS00260HMPREF1093_RS00265
Partner locus tags
HMPREF1093_RS00260HMPREF1093_RS00265
Partner old locus tags
HMPREF1093_00051HMPREF1093_00052
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002599866.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3I6W4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3I6W4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS00265Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00052Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval57 246-58 988 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 547-58 988 ntGCF_000371445::NZ_KB850950.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span55 547-58 988 nt3 442 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 547 nt58 988 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS00260GCF_000371445#HMPREF1093_RS00260
RRunclassified
55 547-57 244 nt · Reverse (-)
HMPREF1093_RS00265GCF_000371445#HMPREF1093_RS00265
HKClassicCurrent focus
57 246-58 988 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS00265The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1161930
Simplified PFAM architecture for HKOC_1161930
PFAM domain coverage: 132 / 580 aa (22.8%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[307-360] | His_kinase[376-453]
- Domain count: 2
- Matched identifier: HKOC_1161930
- Positioned domains: HAMP 307-360 ; His_kinase 376-453
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS00265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key