1 Response_reg#1
5-111 aa · 107 aa · 26.0% of protein
Raw token
Response_reg:5:1.21e-31:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS23175
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS23175Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 411 aa (45.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
316-358 aa · 43 aa · 10.5% of protein
Raw token
HTH_AraC:316:0.0000137:358:43:423 HTH_AraC#3
373-407 aa · 35 aa · 8.5% of protein
Raw token
HTH_AraC:373:0.0000000101:407:35:42- Raw architecture: Response_reg:5:1.21e-31:111:107:111#HTH_AraC:316:0.0000137:358:43:42#HTH_AraC:373:0.0000000101:407:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850951.1::G00117
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2614982-2618103Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_04661RefSeq proteinWP_002604410.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00117Context members
HMPREF1093_RS30305HMPREF1093_RS23175
Partner locus tags
HMPREF1093_RS30305HMPREF1093_RS23175
Partner old locus tags
HMPREF1093_04660HMPREF1093_04661
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002604410.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS23175Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_04661Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval2 616 868-2 618 103 nt1 236 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 614 982-2 618 103 ntGCF_000371445::NZ_KB850951.1::G00117
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00117Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span2 614 982-2 618 103 nt3 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 614 982 nt2 618 103 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS30305GCF_000371445#HMPREF1093_RS30305
HKClassic
2 614 982-2 616 844 nt · Reverse (-)
HMPREF1093_RS23175GCF_000371445#HMPREF1093_RS23175
RRunclassifiedCurrent focus
2 616 868-2 618 103 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS23175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0367760
Simplified PFAM architecture for RROC_0367760
PFAM domain coverage: 186 / 411 aa (45.3%)
1 aa411 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[331-407]
- Domain count: 2
- Matched identifier: RROC_0367760
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 331-407 ; HTH_18 331-407
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS23175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key