1 Response_reg#1
4-113 aa · 110 aa · 36.2% of protein
Raw token
Response_reg:4:6.31e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS19640
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength304 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_000371445#HMPREF1093_RS19640Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 304 aa (60.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
209-250 aa · 42 aa · 13.8% of protein
Raw token
HTH_AraC:209:0.000000574:250:42:423 HTH_AraC#3
267-299 aa · 33 aa · 10.9% of protein
Raw token
HTH_AraC:267:0.00000000447:299:33:42- Raw architecture: Response_reg:4:6.31e-30:113:110:111#HTH_AraC:209:0.000000574:250:42:42#HTH_AraC:267:0.00000000447:299:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_000371445::NZ_KB850951.1::G00100
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span1834811-1840921Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_03955RefSeq proteinWP_002603714.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00100Context members
HMPREF1093_RS19620HMPREF1093_RS19625HMPREF1093_RS19635HMPREF1093_RS19640
Partner locus tags
HMPREF1093_RS19620HMPREF1093_RS19625HMPREF1093_RS19635HMPREF1093_RS19640
Partner old locus tags
HMPREF1093_03951HMPREF1093_03952HMPREF1093_03954HMPREF1093_03955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603714.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DBV9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DBV9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS19640Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_03955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval1 840 007-1 840 921 nt915 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 834 811-1 840 921 ntGCF_000371445::NZ_KB850951.1::G00100
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00100Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span1 834 811-1 840 921 nt6 111 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 834 811 nt1 840 921 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
HMPREF1093_RS19620GCF_000371445#HMPREF1093_RS19620
HKClassic
1 834 811-1 836 652 nt · Forward (+)
HMPREF1093_RS19625GCF_000371445#HMPREF1093_RS19625
RRunclassified
1 836 667-1 838 121 nt · Forward (+)
HMPREF1093_RS19635GCF_000371445#HMPREF1093_RS19635
HKClassic
1 838 390-1 839 883 nt · Forward (+)
HMPREF1093_RS19640GCF_000371445#HMPREF1093_RS19640
RRunclassifiedCurrent focus
1 840 007-1 840 921 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS19640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0565080
Simplified PFAM architecture for RROC_0565080
PFAM domain coverage: 188 / 304 aa (61.8%)
1 aa304 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[223-300]
- Domain count: 2
- Matched identifier: RROC_0565080
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 223-300 ; HTH_18 223-300
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS19640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key