1 Response_reg#1
6-119 aa · 114 aa · 21.1% of protein
Raw token
Response_reg:6:2.25e-32:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS18675
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS18675Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 540 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
448-488 aa · 41 aa · 7.6% of protein
Raw token
HTH_AraC:448:0.00000000481:488:41:423 HTH_AraC#3
509-537 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:509:0.00000552:537:29:42- Raw architecture: Response_reg:6:2.25e-32:119:114:111#HTH_AraC:448:0.00000000481:488:41:42#HTH_AraC:509:0.00000552:537:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850951.1::G00095
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1595431-1598847Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_03759RefSeq proteinWP_002603525.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00095Context members
HMPREF1093_RS18675HMPREF1093_RS18680
Partner locus tags
HMPREF1093_RS18675HMPREF1093_RS18680
Partner old locus tags
HMPREF1093_03759HMPREF1093_03760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603525.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PD66Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PD66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS18675Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_03759Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval1 595 431-1 597 053 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 595 431-1 598 847 ntGCF_000371445::NZ_KB850951.1::G00095
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00095Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span1 595 431-1 598 847 nt3 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 595 431 nt1 598 847 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS18675GCF_000371445#HMPREF1093_RS18675
RRunclassifiedCurrent focus
1 595 431-1 597 053 nt · Forward (+)
HMPREF1093_RS18680GCF_000371445#HMPREF1093_RS18680
HKClassic
1 597 054-1 598 847 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS18675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089401
Simplified PFAM architecture for RROC_0089401
PFAM domain coverage: 328 / 540 aa (60.7%)
1 aa540 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[163-299] | HTH_18[460-537]
- Domain count: 3
- Matched identifier: RROC_0089401
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 163-299 ; GGDEF_2 163-299 ; HTH_18 460-537 ; HTH_18 460-537
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS18675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key