1 dCache_1#1
173-284 aa · 112 aa · 18.5% of protein
Raw token
dCache_1:173:0.0000304:284:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS12480
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS12480Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage375 / 605 aa (62.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation4 items
2 HAMP#2
301-375 aa · 75 aa · 12.4% of protein
Raw token
HAMP:301:0.0000000222:375:76:693 His_kinase#3
391-470 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:391:2.06e-27:470:80:804 HATPase_c#4
487-594 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:487:0.000000313:594:109:109- Raw architecture: dCache_1:173:0.0000304:284:116:195#HAMP:301:0.0000000222:375:76:69#His_kinase:391:2.06e-27:470:80:80#HATPase_c:487:0.000000313:594:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850951.1::G00074
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span245673-248363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02506RefSeq proteinWP_002602288.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00074Context members
HMPREF1093_RS12475HMPREF1093_RS12480
Partner locus tags
HMPREF1093_RS12475HMPREF1093_RS12480
Partner old locus tags
HMPREF1093_02505HMPREF1093_02506
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602288.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DE13Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DE13_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS12480Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02506Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval246 546-248 363 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span245 673-248 363 ntGCF_000371445::NZ_KB850951.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span245 673-248 363 nt2 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
245 673 nt248 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS12475GCF_000371445#HMPREF1093_RS12475
RRunclassified
245 673-246 428 nt · Reverse (-)
HMPREF1093_RS12480GCF_000371445#HMPREF1093_RS12480
HKClassicCurrent focus
246 546-248 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS12480The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1028509
Simplified PFAM architecture for HKOC_1028509
PFAM domain coverage: 79 / 605 aa (13.1%)
1 aa605 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[391-469]
- Domain count: 1
- Matched identifier: HKOC_1028509
- Positioned domains: His_kinase 391-469
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS12480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key