1 dCache_1#1
32-265 aa · 234 aa · 39.8% of protein
Raw token
dCache_1:32:0.000000959:265:241:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS12370
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS12370Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage493 / 588 aa (83.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation4 items
2 HAMP#2
282-351 aa · 70 aa · 11.9% of protein
Raw token
HAMP:282:0.0000000000000172:351:70:693 His_kinase#3
373-452 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:373:2.08e-26:452:80:804 HATPase_c#4
471-579 aa · 109 aa · 18.5% of protein
Raw token
HATPase_c:471:0.000000000242:579:111:109- Raw architecture: dCache_1:32:0.000000959:265:241:195#HAMP:282:0.0000000000000172:351:70:69#His_kinase:373:2.08e-26:452:80:80#HATPase_c:471:0.000000000242:579:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850951.1::G00073
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span224200-226796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02485RefSeq proteinWP_002602268.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00073Context members
HMPREF1093_RS12370HMPREF1093_RS12375
Partner locus tags
HMPREF1093_RS12370HMPREF1093_RS12375
Partner old locus tags
HMPREF1093_02485HMPREF1093_02486
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602268.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4TZZ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4TZZ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS12370Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval224 200-225 966 nt1 767 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span224 200-226 796 ntGCF_000371445::NZ_KB850951.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span224 200-226 796 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 200 nt226 796 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS12370GCF_000371445#HMPREF1093_RS12370
HKClassicCurrent focus
224 200-225 966 nt · Forward (+)
HMPREF1093_RS12375GCF_000371445#HMPREF1093_RS12375
RRunclassified
225 963-226 796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS12370The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1120116
Simplified PFAM architecture for HKOC_1120116
PFAM domain coverage: 242 / 588 aa (41.2%)
1 aa588 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[300-351] | His_kinase[373-452] | HATPase_c[471-580]
- Domain count: 3
- Matched identifier: HKOC_1120116
- Positioned domains: HAMP 300-351 ; His_kinase 373-452 ; HATPase_c 471-580
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS12370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key