1 Response_reg#1
4-117 aa · 114 aa · 44.7% of protein
Raw token
Response_reg:4:2.71e-21:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS10975
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS10975Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 255 aa (57.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
166-198 aa · 33 aa · 12.9% of protein
Raw token
HTH_AraC:166:0.0000155:198:33:42- Raw architecture: Response_reg:4:2.71e-21:117:114:111#HTH_AraC:166:0.0000155:198:33:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00063
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2597172-2597939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02202RefSeq proteinWP_002601994.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00063Context members
HMPREF1093_RS10975
Partner locus tags
HMPREF1093_RS10975
Partner old locus tags
HMPREF1093_02202
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601994.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P964Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P964_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS10975Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02202Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 597 172-2 597 939 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 597 172-2 597 939 ntGCF_000371445::NZ_KB850950.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 597 172-2 597 939 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 597 172 nt2 597 939 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS10975GCF_000371445#HMPREF1093_RS10975
RRunclassifiedCurrent focus
2 597 172-2 597 939 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680282
Simplified PFAM architecture for RROC_0680282
PFAM domain coverage: 191 / 255 aa (74.9%)
1 aa255 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[171-248]
- Domain count: 2
- Matched identifier: RROC_0680282
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 171-248 ; HTH_18 171-248
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key