1 HAMP#1
280-349 aa · 70 aa · 12.1% of protein
Raw token
HAMP:280:0.000000000000808:349:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS10695
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS10695Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 578 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-439 aa · 76 aa · 13.1% of protein
Raw token
His_kinase:364:2.12e-24:439:76:803 HATPase_c#3
460-565 aa · 106 aa · 18.3% of protein
Raw token
HATPase_c:460:0.0000000000874:565:110:109- Raw architecture: HAMP:280:0.000000000000808:349:70:69#His_kinase:364:2.12e-24:439:76:80#HATPase_c:460:0.0000000000874:565:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2534037-2537232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02146RefSeq proteinWP_002601938.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00060Context members
HMPREF1093_RS10690HMPREF1093_RS10695
Partner locus tags
HMPREF1093_RS10690HMPREF1093_RS10695
Partner old locus tags
HMPREF1093_02145HMPREF1093_02146
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601938.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DT22Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DT22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS10695Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02146Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 535 496-2 537 232 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 534 037-2 537 232 ntGCF_000371445::NZ_KB850950.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 534 037-2 537 232 nt3 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 534 037 nt2 537 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS10690GCF_000371445#HMPREF1093_RS10690
RRunclassified
2 534 037-2 535 521 nt · Reverse (-)
HMPREF1093_RS10695GCF_000371445#HMPREF1093_RS10695
HKClassicCurrent focus
2 535 496-2 537 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10695The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1172417
Simplified PFAM architecture for HKOC_1172417
PFAM domain coverage: 221 / 578 aa (38.2%)
1 aa578 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[309-348] | His_kinase[364-440] | HATPase_c[463-566]
- Domain count: 3
- Matched identifier: HKOC_1172417
- Positioned domains: HAMP 309-348 ; His_kinase 364-440 ; HATPase_c 463-566
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key