1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:1.36e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS10605
Response regulator OmpR family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS10605Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-233 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:159:1.86e-29:233:76:77- Raw architecture: Response_reg:6:1.36e-33:115:111:111#Trans_reg_C:159:1.86e-29:233:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2510754-2513829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02127RefSeq proteinWP_002601919.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00058Context members
HMPREF1093_RS10600HMPREF1093_RS10605
Partner locus tags
HMPREF1093_RS10600HMPREF1093_RS10605
Partner old locus tags
HMPREF1093_02126HMPREF1093_02127
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601919.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7H8Y7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7H8Y7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS10605Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02127Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 513 116-2 513 829 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 510 754-2 513 829 ntGCF_000371445::NZ_KB850950.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 510 754-2 513 829 nt3 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 510 754 nt2 513 829 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS10600GCF_000371445#HMPREF1093_RS10600
HKClassic
2 510 754-2 513 132 nt · Reverse (-)
HMPREF1093_RS10605GCF_000371445#HMPREF1093_RS10605
RROmpRCurrent focus
2 513 116-2 513 829 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962488
Simplified PFAM architecture for RROC_0962488
PFAM domain coverage: 183 / 237 aa (77.2%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[159-232]
- Domain count: 2
- Matched identifier: RROC_0962488
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 159-232 ; Trans_reg_C 159-232
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key