1 Response_reg#1
7-116 aa · 110 aa · 57.6% of protein
Raw token
Response_reg:7:2.72e-31:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS09540
Response regulator, AmiR_NasR family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS09540Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 191 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:1.49e-17:186:49:49- Raw architecture: Response_reg:7:2.72e-31:116:110:111#ANTAR:138:1.49e-17:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2262800-2264869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01916RefSeq proteinWP_002601712.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00052Context members
HMPREF1093_RS09535HMPREF1093_RS09540
Partner locus tags
HMPREF1093_RS09535HMPREF1093_RS09540
Partner old locus tags
HMPREF1093_01915HMPREF1093_01916
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS09540Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01916Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 264 294-2 264 869 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 262 800-2 264 869 ntGCF_000371445::NZ_KB850950.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 262 800-2 264 869 nt2 070 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 262 800 nt2 264 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS09535GCF_000371445#HMPREF1093_RS09535
HKClassic
2 262 800-2 264 221 nt · Reverse (-)
HMPREF1093_RS09540GCF_000371445#HMPREF1093_RS09540
RRAmiR_NasRCurrent focus
2 264 294-2 264 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS09540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2167884
Simplified PFAM architecture for RROC_2167884
PFAM domain coverage: 160 / 191 aa (83.8%)
1 aa191 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[7-115] | ANTAR[135-185]
- Domain count: 2
- Matched identifier: RROC_2167884
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; ANTAR 135-185 ; ANTAR 135-185
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS09540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key