1 dCache_1#1
34-259 aa · 226 aa · 38.2% of protein
Raw token
dCache_1:34:0.00000549:259:228:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS06045
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS06045Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage411 / 592 aa (69.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-467 aa · 82 aa · 13.9% of protein
Raw token
His_kinase:386:4.36e-29:467:82:803 HATPase_c#3
484-586 aa · 103 aa · 17.4% of protein
Raw token
HATPase_c:484:0.000000000000636:586:108:109- Raw architecture: dCache_1:34:0.00000549:259:228:195#His_kinase:386:4.36e-29:467:82:80#HATPase_c:484:0.000000000000636:586:108:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1406064-1408576Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01216RefSeq proteinWP_002601024.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00035Context members
HMPREF1093_RS06045HMPREF1093_RS06050
Partner locus tags
HMPREF1093_RS06045HMPREF1093_RS06050
Partner old locus tags
HMPREF1093_01216HMPREF1093_01217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601024.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DRS0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DRS0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS06045Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01216Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 406 064-1 407 842 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 406 064-1 408 576 ntGCF_000371445::NZ_KB850950.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 406 064-1 408 576 nt2 513 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 406 064 nt1 408 576 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS06045GCF_000371445#HMPREF1093_RS06045
HKClassicCurrent focus
1 406 064-1 407 842 nt · Reverse (-)
HMPREF1093_RS06050GCF_000371445#HMPREF1093_RS06050
RRunclassified
1 407 839-1 408 576 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS06045The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1099069
Simplified PFAM architecture for HKOC_1099069
PFAM domain coverage: 185 / 592 aa (31.3%)
1 aa592 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[386-467] | HATPase_c[486-588]
- Domain count: 2
- Matched identifier: HKOC_1099069
- Positioned domains: His_kinase 386-467 ; HATPase_c 486-588
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS06045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key