1 Response_reg#1
4-117 aa · 114 aa · 22.0% of protein
Raw token
Response_reg:4:7.78e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS04645
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS04645Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 518 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-466 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:425:0.00000000845:466:42:423 HTH_AraC#3
480-516 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:480:0.0000000239:516:37:42- Raw architecture: Response_reg:4:7.78e-29:117:114:111#HTH_AraC:425:0.00000000845:466:42:42#HTH_AraC:480:0.0000000239:516:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1074359-1077701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00936RefSeq proteinWP_002600747.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00030Context members
HMPREF1093_RS04645HMPREF1093_RS04650
Partner locus tags
HMPREF1093_RS04645HMPREF1093_RS04650
Partner old locus tags
HMPREF1093_00936HMPREF1093_00937
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600747.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DSI9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DSI9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS04645Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00936Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 074 359-1 075 915 nt1 557 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 074 359-1 077 701 ntGCF_000371445::NZ_KB850950.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 074 359-1 077 701 nt3 343 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 074 359 nt1 077 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS04645GCF_000371445#HMPREF1093_RS04645
RRunclassifiedCurrent focus
1 074 359-1 075 915 nt · Reverse (-)
HMPREF1093_RS04650GCF_000371445#HMPREF1093_RS04650
HKClassic
1 075 893-1 077 701 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS04645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129151
Simplified PFAM architecture for RROC_0129151
PFAM domain coverage: 269 / 518 aa (51.9%)
1 aa518 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[201-278] | HTH_18[439-517]
- Domain count: 3
- Matched identifier: RROC_0129151
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GGDEF_2 201-278 ; GGDEF_2 201-278 ; HTH_18 439-517 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS04645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key