1 HisKA#1
163-230 aa · 68 aa · 16.9% of protein
Raw token
HisKA:163:0.0000000000000458:230:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1347_RS15545
Histidine kinase, Classic
Enterococcus faecium 504 · GCF_000295275
ClassHKTypeClassicLength402 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295275#HMPREF1347_RS15545Stable P2CS identifier used across views.
GenomeGCF_000295275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length402 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 402 aa (44.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa402 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
276-387 aa · 112 aa · 27.9% of protein
Raw token
HATPase_c:276:9.05e-27:387:113:109- Raw architecture: HisKA:163:0.0000000000000458:230:68:64#HATPase_c:276:9.05e-27:387:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295275::NZ_JH811569.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1931-3815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1347_02664RefSeq proteinWP_002377686.1
Context group ID
GCF_000295275::NZ_JH811569.1::G00018Context members
HMPREF1347_RS15545HMPREF1347_RS15550
Partner locus tags
HMPREF1347_RS15545HMPREF1347_RS15550
Partner old locus tags
HMPREF1347_02664HMPREF1347_02665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002377686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1347_RS15545Primary locus identifier stored in the genes table.
Old locus tagHMPREF1347_02664Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811569.1Sequence record reported by the local genomic context database.
Genomic interval1 931-3 139 nt1 209 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 931-3 815 ntGCF_000295275::NZ_JH811569.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295275::NZ_JH811569.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811569.1All displayed genes belong to this local TCS context.
Neighborhood span1 931-3 815 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 931 nt3 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1347_RS15545GCF_000295275#HMPREF1347_RS15545
HKClassicCurrent focus
1 931-3 139 nt · Reverse (-)
HMPREF1347_RS15550GCF_000295275#HMPREF1347_RS15550
RROmpR
3 126-3 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000295275#HMPREF1347_RS15545The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2422976
Simplified PFAM architecture for HKOC_2422976
PFAM domain coverage: 177 / 402 aa (44.0%)
1 aa402 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[276-386]
- Domain count: 2
- Matched identifier: HKOC_2422976
- Positioned domains: HisKA 164-229 ; HATPase_c 276-386
Cluster members and taxonomy
Representative gene: GCF_000295275#HMPREF1347_RS15545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 805 · GCF_000295275
AssemblyASM29527v2 · Scaffoldhaploid
Genome composition2 617 730 bp · 38,0% GCEnterococcus faecium 504
Signal transduction countsGenes 35 · HK 18 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key