1 Response_reg#1
5-117 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:5:8.15e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1347_RS03995
Response regulator, unclassified
Enterococcus faecium 504 · GCF_000295275
ClassRRTypeunclassifiedLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000295275#HMPREF1347_RS03995Stable P2CS identifier used across views.
GenomeGCF_000295275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 238 aa (47.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.15e-32:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000295275::NZ_JH811474.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span82385-83101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1347_00085RefSeq proteinWP_002375421.1
Context group ID
GCF_000295275::NZ_JH811474.1::G00002Context members
HMPREF1347_RS03995
Partner locus tags
HMPREF1347_RS03995
Partner old locus tags
HMPREF1347_00085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002375421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1347_RS03995Primary locus identifier stored in the genes table.
Old locus tagHMPREF1347_00085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811474.1Sequence record reported by the local genomic context database.
Genomic interval82 385-83 101 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 385-83 101 ntGCF_000295275::NZ_JH811474.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295275::NZ_JH811474.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811474.1All displayed genes belong to this local TCS context.
Neighborhood span82 385-83 101 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 385 nt83 101 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1347_RS03995GCF_000295275#HMPREF1347_RS03995
RRunclassifiedCurrent focus
82 385-83 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000295275#HMPREF1347_RS03995The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0933334
Simplified PFAM architecture for RROC_0933334
PFAM domain coverage: 112 / 238 aa (47.1%)
1 aa238 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_0933334
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_000295275#HMPREF1347_RS03995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 805 · GCF_000295275
AssemblyASM29527v2 · Scaffoldhaploid
Genome composition2 617 730 bp · 38,0% GCEnterococcus faecium 504
Signal transduction countsGenes 35 · HK 18 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key