1 sCache_like#1
65-125 aa · 61 aa · 11.1% of protein
Raw token
sCache_like:65:0.0000151:125:61:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG0316_RS113615
Histidine kinase, Classic
Streptococcus agalactiae GB00206 · GCF_000289535
ClassHKTypeClassicLength551 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000289535#SAG0316_RS113615Stable P2CS identifier used across views.
GenomeGCF_000289535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length551 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage328 / 551 aa (59.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa551 aa
Domain-by-domain annotation4 items
2 PAS_9#2
233-324 aa · 92 aa · 16.7% of protein
Raw token
PAS_9:233:0.0000854:324:101:1023 HisKA#3
332-397 aa · 66 aa · 12.0% of protein
Raw token
HisKA:332:3.6e-17:397:66:644 HATPase_c#4
440-548 aa · 109 aa · 19.8% of protein
Raw token
HATPase_c:440:5.93e-29:548:109:109- Raw architecture: sCache_like:65:0.0000151:125:61:114#PAS_9:233:0.0000854:324:101:102#HisKA:332:3.6e-17:397:66:64#HATPase_c:440:5.93e-29:548:109:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000289535::NZ_ALTB01000026.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22545-24870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG0316_02345RefSeq proteinWP_000162279.1
Context group ID
GCF_000289535::NZ_ALTB01000026.1::G00018Context members
SAG0316_RS113615SAG0316_RS113610
Partner locus tags
SAG0316_RS113615SAG0316_RS113610
Partner old locus tags
SAG0316_02345SAG0316_02350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000162279.1Primary protein accession used for annex mappings.
UniProt accessionQ8DX93Primary UniProt accession resolved in the annex database.
UniProt IDQ8DX93_STRA5Display identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG0316_RS113615Primary locus identifier stored in the genes table.
Old locus tagSAG0316_02345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ALTB01000026.1Sequence record reported by the local genomic context database.
Genomic interval22 545-24 200 nt1 656 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 545-24 870 ntGCF_000289535::NZ_ALTB01000026.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000289535::NZ_ALTB01000026.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ALTB01000026.1All displayed genes belong to this local TCS context.
Neighborhood span22 545-24 870 nt2 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 545 nt24 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG0316_RS113615GCF_000289535#SAG0316_RS113615
HKClassicCurrent focus
22 545-24 200 nt · Reverse (-)
SAG0316_RS113610GCF_000289535#SAG0316_RS113610
RROmpR
24 193-24 870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS12345Use this link to inspect the representative gene detail.
PFAM architecturePAS_10 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1289658
Simplified PFAM architecture for HKOC_1289658
PFAM domain coverage: 271 / 551 aa (49.2%)
1 aa551 aa
PAS_10HisKAHATPase_c
- Simplified architecture: PAS_10 + HisKA + HATPase_c
- Raw architecture: PAS_10[227-323] | HisKA[332-396] | HATPase_c[441-549]
- Domain count: 3
- Matched identifier: HKOC_1289658
- Positioned domains: PAS_10 227-323 ; HisKA 332-396 ; HATPase_c 441-549
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS12345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 154 907 · GCF_000289535
AssemblyASM28953v1 · Contighaploid
Genome composition2 181 324 bp · 35,5% GCStreptococcus agalactiae GB00206
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key