1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:2.8e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG0316_RS112080
Response regulator OmpR family
Streptococcus agalactiae GB00206 · GCF_000289535
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000289535#SAG0316_RS112080Stable P2CS identifier used across views.
GenomeGCF_000289535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 228 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-213 aa · 69 aa · 30.3% of protein
Raw token
Trans_reg_C:145:0.00000000000000105:213:69:77- Raw architecture: Response_reg:3:2.8e-36:113:111:111#Trans_reg_C:145:0.00000000000000105:213:69:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000289535::NZ_ALTB01000031.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24639-26554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG0316_00565RefSeq proteinWP_001264419.1
Context group ID
GCF_000289535::NZ_ALTB01000031.1::G00021Context members
SAG0316_RS112080SAG0316_RS112075
Partner locus tags
SAG0316_RS112080SAG0316_RS112075
Partner old locus tags
SAG0316_00565SAG0316_00570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001264419.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3HS38Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3HS38_STRAGDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG0316_RS112080Primary locus identifier stored in the genes table.
Old locus tagSAG0316_00565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ALTB01000031.1Sequence record reported by the local genomic context database.
Genomic interval24 639-25 325 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 639-26 554 ntGCF_000289535::NZ_ALTB01000031.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000289535::NZ_ALTB01000031.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ALTB01000031.1All displayed genes belong to this local TCS context.
Neighborhood span24 639-26 554 nt1 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 639 nt26 554 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG0316_RS112080GCF_000289535#SAG0316_RS112080
RROmpRCurrent focus
24 639-25 325 nt · Forward (+)
SAG0316_RS112075GCF_000289535#SAG0316_RS112075
HKClassic
25 325-26 554 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000288075#SAG0194_RS115245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1303331
Simplified PFAM architecture for RROC_1303331
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[145-222]
- Domain count: 2
- Matched identifier: RROC_1303331
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 145-222 ; Trans_reg_C 145-222
Cluster members and taxonomy
Representative gene: GCF_000288075#SAG0194_RS115245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 154 907 · GCF_000289535
AssemblyASM28953v1 · Contighaploid
Genome composition2 181 324 bp · 35,5% GCStreptococcus agalactiae GB00206
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key