1 HAMP#1
144-207 aa · 64 aa · 14.6% of protein
Raw token
HAMP:144:0.00000226:207:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG0316_RS113275
Histidine kinase, Classic
Streptococcus agalactiae GB00206 · GCF_000289535
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000289535#SAG0316_RS113275Stable P2CS identifier used across views.
GenomeGCF_000289535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 439 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-294 aa · 63 aa · 14.4% of protein
Raw token
HisKA:232:0.0000195:294:63:643 HATPase_c#3
342-436 aa · 95 aa · 21.6% of protein
Raw token
HATPase_c:342:0.00000848:436:103:109- Raw architecture: HAMP:144:0.00000226:207:64:69#HisKA:232:0.0000195:294:63:64#HATPase_c:342:0.00000848:436:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000289535::NZ_ALTB01000027.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47514-49483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG0316_02220RefSeq proteinWP_000734169.1
Context group ID
GCF_000289535::NZ_ALTB01000027.1::G00019Context members
SAG0316_RS113280SAG0316_RS113275
Partner locus tags
SAG0316_RS113280SAG0316_RS113275
Partner old locus tags
SAG0316_02215SAG0316_02220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000734169.1Primary protein accession used for annex mappings.
UniProt accessionQ8E0V2Primary UniProt accession resolved in the annex database.
UniProt IDQ8E0V2_STRA5Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG0316_RS113275Primary locus identifier stored in the genes table.
Old locus tagSAG0316_02220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ALTB01000027.1Sequence record reported by the local genomic context database.
Genomic interval48 164-49 483 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 514-49 483 ntGCF_000289535::NZ_ALTB01000027.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000289535::NZ_ALTB01000027.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ALTB01000027.1All displayed genes belong to this local TCS context.
Neighborhood span47 514-49 483 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 514 nt49 483 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG0316_RS113280GCF_000289535#SAG0316_RS113280
RROmpR
47 514-48 167 nt · Forward (+)
SAG0316_RS113275GCF_000289535#SAG0316_RS113275
HKClassicCurrent focus
48 164-49 483 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS05875Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2082205
Simplified PFAM architecture for HKOC_2082205
PFAM domain coverage: 82 / 439 aa (18.7%)
1 aa439 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[343-424]
- Domain count: 1
- Matched identifier: HKOC_2082205
- Positioned domains: HATPase_c 343-424
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS05875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 154 907 · GCF_000289535
AssemblyASM28953v1 · Contighaploid
Genome composition2 181 324 bp · 35,5% GCStreptococcus agalactiae GB00206
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key