1 Response_reg#1
4-114 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:4:3.26e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG0316_RS112820
Response regulator OmpR family
Streptococcus agalactiae GB00206 · GCF_000289535
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000289535#SAG0316_RS112820Stable P2CS identifier used across views.
GenomeGCF_000289535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:147:9.7e-25:219:76:77- Raw architecture: Response_reg:4:3.26e-33:114:111:111#Trans_reg_C:147:9.7e-25:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000289535::NZ_ALTB01000029.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31197-32931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG0316_01420RefSeq proteinWP_000590686.1
Context group ID
GCF_000289535::NZ_ALTB01000029.1::G00020Context members
SAG0316_RS112825SAG0316_RS112820
Partner locus tags
SAG0316_RS112825SAG0316_RS112820
Partner old locus tags
SAG0316_01415SAG0316_01420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000590686.1Primary protein accession used for annex mappings.
UniProt accessionQ8E274Primary UniProt accession resolved in the annex database.
UniProt IDQ8E274_STRA5Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG0316_RS112820Primary locus identifier stored in the genes table.
Old locus tagSAG0316_01420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ALTB01000029.1Sequence record reported by the local genomic context database.
Genomic interval32 260-32 931 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 197-32 931 ntGCF_000289535::NZ_ALTB01000029.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000289535::NZ_ALTB01000029.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ALTB01000029.1All displayed genes belong to this local TCS context.
Neighborhood span31 197-32 931 nt1 735 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 197 nt32 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG0316_RS112825GCF_000289535#SAG0316_RS112825
HKClassic
31 197-32 276 nt · Reverse (-)
SAG0316_RS112820GCF_000289535#SAG0316_RS112820
RROmpRCurrent focus
32 260-32 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS03325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586811
Simplified PFAM architecture for RROC_1586811
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1586811
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS03325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 154 907 · GCF_000289535
AssemblyASM28953v1 · Contighaploid
Genome composition2 181 324 bp · 35,5% GCStreptococcus agalactiae GB00206
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key