1 HisKA#1
193-248 aa · 56 aa · 13.4% of protein
Raw token
HisKA:193:0.00000000131:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1014_RS00550
Histidine kinase, Classic
Bacillus sp. 7_6_55CFAA_CT2 · GCF_000238655
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000238655#HMPREF1014_RS00550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 417 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-401 aa · 106 aa · 25.4% of protein
Raw token
HATPase_c:296:1.05e-16:401:109:109- Raw architecture: HisKA:193:0.00000000131:248:57:64#HATPase_c:296:1.05e-16:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000238655::NZ_JH414708.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span88773-90026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1014_00090RefSeq proteinWP_000664886.1
Context group ID
GCF_000238655::NZ_JH414708.1::G00004Context members
HMPREF1014_RS00550
Partner locus tags
HMPREF1014_RS00550
Partner old locus tags
HMPREF1014_00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000664886.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6JP18Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6JP18_BACUKDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1014_RS00550Primary locus identifier stored in the genes table.
Old locus tagHMPREF1014_00090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH414708.1Sequence record reported by the local genomic context database.
Genomic interval88 773-90 026 nt1 254 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 773-90 026 ntGCF_000238655::NZ_JH414708.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000238655::NZ_JH414708.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH414708.1All displayed genes belong to this local TCS context.
Neighborhood span88 773-90 026 nt1 254 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 773 nt90 026 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1014_RS00550GCF_000238655#HMPREF1014_RS00550
HKClassicCurrent focus
88 773-90 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000238655#HMPREF1014_RS00550The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293554
Simplified PFAM architecture for HKOC_2293554
PFAM domain coverage: 318 / 417 aa (76.3%)
1 aa417 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-400]
- Domain count: 3
- Matched identifier: HKOC_2293554
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-400
Cluster members and taxonomy
Representative gene: GCF_000238655#HMPREF1014_RS00550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 665 957 · GCF_000238655
AssemblyBacillus_sp_7_6_55CFAA_CT2_V1 · Scaffoldhaploid
Genome composition5 747 288 bp · 35,0% GCBacillus sp. 7_6_55CFAA_CT2
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key