1 HAMP#1
310-377 aa · 68 aa · 11.0% of protein
Raw token
HAMP:310:0.0000000000001:377:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1014_RS00385
Histidine kinase, Classic
Bacillus sp. 7_6_55CFAA_CT2 · GCF_000238655
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000238655#HMPREF1014_RS00385Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 616 aa (39.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.6% of protein
Raw token
HisKA:397:0.00000000000000394:461:65:643 HATPase_c#3
505-615 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:505:6.3e-22:615:112:109- Raw architecture: HAMP:310:0.0000000000001:377:68:69#HisKA:397:0.00000000000000394:461:65:64#HATPase_c:505:6.3e-22:615:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000238655::NZ_JH414708.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59496-62032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1014_00057RefSeq proteinWP_001225358.1
Context group ID
GCF_000238655::NZ_JH414708.1::G00003Context members
HMPREF1014_RS00380HMPREF1014_RS00385
Partner locus tags
HMPREF1014_RS00380HMPREF1014_RS00385
Partner old locus tags
HMPREF1014_00056HMPREF1014_00057
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001225358.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1014_RS00385Primary locus identifier stored in the genes table.
Old locus tagHMPREF1014_00057Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH414708.1Sequence record reported by the local genomic context database.
Genomic interval60 182-62 032 nt1 851 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 496-62 032 ntGCF_000238655::NZ_JH414708.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000238655::NZ_JH414708.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH414708.1All displayed genes belong to this local TCS context.
Neighborhood span59 496-62 032 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 496 nt62 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1014_RS00380GCF_000238655#HMPREF1014_RS00380
RROmpR
59 496-60 185 nt · Forward (+)
HMPREF1014_RS00385GCF_000238655#HMPREF1014_RS00385
HKClassicCurrent focus
60 182-62 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000238655#HMPREF1014_RS00385The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0985238
Simplified PFAM architecture for HKOC_0985238
PFAM domain coverage: 224 / 616 aa (36.4%)
1 aa616 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[328-377] | HisKA[397-461] | HATPase_c[507-615]
- Domain count: 3
- Matched identifier: HKOC_0985238
- Positioned domains: HAMP 328-377 ; HisKA 397-461 ; HATPase_c 507-615
Cluster members and taxonomy
Representative gene: GCF_000238655#HMPREF1014_RS00385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 665 957 · GCF_000238655
AssemblyBacillus_sp_7_6_55CFAA_CT2_V1 · Scaffoldhaploid
Genome composition5 747 288 bp · 35,0% GCBacillus sp. 7_6_55CFAA_CT2
Signal transduction countsGenes 105 · HK 55 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key